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get them on the table. although their story needs a little cleaning up its a good idea. but after being even slightly tainted by the darkness they would be considered heretics or daemons in this case and would be disapproved of, and therefore exterminated. maybe change the story a little and make them the remnants/escapees of an exodus of their home planet which has been tainted by the paradox and therefore must be exterminated. they escape and run into a sympathetic inquisitor or something. just a suggestion, work and expand on it until its too your liking.